PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC5306_p2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 391aa    MW: 42677.5 Da    PI: 9.8755
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC5306_p2genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.31e-11204246754
                 HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
         HLH   7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                 ++ErrRR+++N+++  Lr+++Pk +      K++ a+iL  A++Y+k+L
  RrC5306_p2 204 MAERRRRKKLNDRLYMLRSVVPKiS------KMDRASILGDAIDYLKEL 246
                 79*********************66......****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.866197246IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.59E-17200266IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.4E-9203246IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.2E-14203252IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.52E-12204250No hitNo description
Gene3DG3DSA:4.10.280.109.5E-16204259IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd048731.29E-6320380No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 391 aa     Download sequence    Send to blast
MRRRRRKLQL TSNLCLKVVS GSLTNHKTST CYRAIIIIKI SDSSVVVVVS LLILTTIFFS  60
IRSWPLLTTT SLVSSTLLII ITMPLSSGLF GSLSSSSVPD FLSARENNNT STPLESEGFG  120
SRAKVLKPLE VLASSGAQPT LFQKRAAMRK LSEDGEMDET GVDVSGLNYE SDELDESCKV  180
VQNGGGGGGG NKGKKKGMPA KNLMAERRRR KKLNDRLYML RSVVPKISKM DRASILGDAI  240
DYLKELLQRI NDLHSELEST PSGSLPPTSS SFHPLTPTPQ TLSCRVKEEL CPSSLPSPKG  300
QQARVRLTLF MVVFGRAVNI HMFCGRRPGL LLATMKALDS LGLDVQQAVI SCFNGFALDV  360
FRAEQCQEGQ EIMPDQIKAV LFDTAGYAGM I
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1193211KKKGMPAKNLMAERRRRKK
2205212ERRRRKKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ8912870.0HQ891287.1 Raphanus sativus inducer of CBF expression 1 protein (ICE1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013644714.11e-171PREDICTED: transcription factor ICE1-like
RefseqXP_013662974.11e-171PREDICTED: transcription factor ICE1-like
SwissprotQ9LSE21e-169ICE1_ARATH; Transcription factor ICE1
TrEMBLF1DRM10.0F1DRM1_RAPSA; Inducer of CBF expression 1 protein
STRINGBra025226.1-P1e-168(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19522782
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G26744.41e-150bHLH family protein